Structure-guided activity enhancement and catalytic mechanism of yeast grx8.
Identifieur interne : 000598 ( Main/Exploration ); précédent : 000597; suivant : 000599Structure-guided activity enhancement and catalytic mechanism of yeast grx8.
Auteurs : Yajun Tang [République populaire de Chine] ; Jiahai Zhang ; Jiang Yu ; Ling Xu ; Jihui Wu ; Cong-Zhao Zhou ; Yunyu ShiSource :
- Biochemistry [ 1520-4995 ] ; 2014.
Descripteurs français
- KwdFr :
- Activation enzymatique (MeSH), Biocatalyse (MeSH), Cinétique (MeSH), Conformation des protéines (MeSH), Glutarédoxines (composition chimique), Glutarédoxines (isolement et purification), Glutarédoxines (métabolisme), Protéines recombinantes (composition chimique), Protéines recombinantes (isolement et purification), Protéines recombinantes (métabolisme), Résonance magnétique nucléaire biomoléculaire (MeSH), Saccharomyces cerevisiae (enzymologie).
- MESH :
- composition chimique : Glutarédoxines, Protéines recombinantes.
- enzymologie : Saccharomyces cerevisiae.
- isolement et purification : Glutarédoxines, Protéines recombinantes.
- métabolisme : Glutarédoxines, Protéines recombinantes.
- Activation enzymatique, Biocatalyse, Cinétique, Conformation des protéines, Résonance magnétique nucléaire biomoléculaire.
English descriptors
- KwdEn :
- Biocatalysis (MeSH), Enzyme Activation (MeSH), Glutaredoxins (chemistry), Glutaredoxins (isolation & purification), Glutaredoxins (metabolism), Kinetics (MeSH), Nuclear Magnetic Resonance, Biomolecular (MeSH), Protein Conformation (MeSH), Recombinant Proteins (chemistry), Recombinant Proteins (isolation & purification), Recombinant Proteins (metabolism), Saccharomyces cerevisiae (enzymology).
- MESH :
- chemical , chemistry : Glutaredoxins, Recombinant Proteins.
- chemical , isolation & purification : Glutaredoxins, Recombinant Proteins.
- chemical , metabolism : Glutaredoxins, Recombinant Proteins.
- enzymology : Saccharomyces cerevisiae.
- Biocatalysis, Enzyme Activation, Kinetics, Nuclear Magnetic Resonance, Biomolecular, Protein Conformation.
Abstract
Glutaredoxins (Grxs) are wide-spread oxidoreductases that are found in all kingdoms of life. The yeast Saccharomyces cerevisiae encodes eight Grxs, among which, Grx8 shares a sequence identity of 30 and 23% with typical dithiol Grx1 and Grx2, respectively, but it exhibits a much lower GSH-dependent oxidoreductase activity. To elucidate its catalytic mechanism, we solved the solution structure of Grx8, which displays a typical Grx fold. Structural analysis indicated that Grx8 possesses a negatively charged CXXC motif (Cys(33)-Pro(34)-Asp(35)-Cys(36)) and a GSH-recognition site, which are distinct from Grx1 and Grx2. Subsequent structure-guided site mutations revealed that the D35Y single mutant and N80T/L81V double mutant possess increased activity of 10- and 11-fold, respectively; moreover, the D35Y/N80T/L81V triple mutant has increased activity of up to 44-fold, which is comparable to that of canonical Grx. Biochemical analyses suggested that the increase in catalytic efficiency resulted from a decreased pKa value of catalytic cysteine Cys33 and/or enhancement of the putative GSH-recognition site. Moreover, NMR chemical shift perturbation analyses combined with GSH analogue inhibition assays enabled us to elucidate that wild-type Grx8 and all mutants adopt a ping-pong mechanism of catalysis. All together, these findings provide structural insights into the catalytic mechanism of dithiol Grxs.
DOI: 10.1021/bi401293s
PubMed: 24611845
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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<term>Glutaredoxins (isolation & purification)</term>
<term>Glutaredoxins (metabolism)</term>
<term>Kinetics (MeSH)</term>
<term>Nuclear Magnetic Resonance, Biomolecular (MeSH)</term>
<term>Protein Conformation (MeSH)</term>
<term>Recombinant Proteins (chemistry)</term>
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<term>Conformation des protéines (MeSH)</term>
<term>Glutarédoxines (composition chimique)</term>
<term>Glutarédoxines (isolement et purification)</term>
<term>Glutarédoxines (métabolisme)</term>
<term>Protéines recombinantes (composition chimique)</term>
<term>Protéines recombinantes (isolement et purification)</term>
<term>Protéines recombinantes (métabolisme)</term>
<term>Résonance magnétique nucléaire biomoléculaire (MeSH)</term>
<term>Saccharomyces cerevisiae (enzymologie)</term>
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<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Glutaredoxins</term>
<term>Recombinant Proteins</term>
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<front><div type="abstract" xml:lang="en">Glutaredoxins (Grxs) are wide-spread oxidoreductases that are found in all kingdoms of life. The yeast Saccharomyces cerevisiae encodes eight Grxs, among which, Grx8 shares a sequence identity of 30 and 23% with typical dithiol Grx1 and Grx2, respectively, but it exhibits a much lower GSH-dependent oxidoreductase activity. To elucidate its catalytic mechanism, we solved the solution structure of Grx8, which displays a typical Grx fold. Structural analysis indicated that Grx8 possesses a negatively charged CXXC motif (Cys(33)-Pro(34)-Asp(35)-Cys(36)) and a GSH-recognition site, which are distinct from Grx1 and Grx2. Subsequent structure-guided site mutations revealed that the D35Y single mutant and N80T/L81V double mutant possess increased activity of 10- and 11-fold, respectively; moreover, the D35Y/N80T/L81V triple mutant has increased activity of up to 44-fold, which is comparable to that of canonical Grx. Biochemical analyses suggested that the increase in catalytic efficiency resulted from a decreased pKa value of catalytic cysteine Cys33 and/or enhancement of the putative GSH-recognition site. Moreover, NMR chemical shift perturbation analyses combined with GSH analogue inhibition assays enabled us to elucidate that wild-type Grx8 and all mutants adopt a ping-pong mechanism of catalysis. All together, these findings provide structural insights into the catalytic mechanism of dithiol Grxs. </div>
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<Abstract><AbstractText>Glutaredoxins (Grxs) are wide-spread oxidoreductases that are found in all kingdoms of life. The yeast Saccharomyces cerevisiae encodes eight Grxs, among which, Grx8 shares a sequence identity of 30 and 23% with typical dithiol Grx1 and Grx2, respectively, but it exhibits a much lower GSH-dependent oxidoreductase activity. To elucidate its catalytic mechanism, we solved the solution structure of Grx8, which displays a typical Grx fold. Structural analysis indicated that Grx8 possesses a negatively charged CXXC motif (Cys(33)-Pro(34)-Asp(35)-Cys(36)) and a GSH-recognition site, which are distinct from Grx1 and Grx2. Subsequent structure-guided site mutations revealed that the D35Y single mutant and N80T/L81V double mutant possess increased activity of 10- and 11-fold, respectively; moreover, the D35Y/N80T/L81V triple mutant has increased activity of up to 44-fold, which is comparable to that of canonical Grx. Biochemical analyses suggested that the increase in catalytic efficiency resulted from a decreased pKa value of catalytic cysteine Cys33 and/or enhancement of the putative GSH-recognition site. Moreover, NMR chemical shift perturbation analyses combined with GSH analogue inhibition assays enabled us to elucidate that wild-type Grx8 and all mutants adopt a ping-pong mechanism of catalysis. All together, these findings provide structural insights into the catalytic mechanism of dithiol Grxs. </AbstractText>
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